What’s new

0.6.1.dev

Released MONTH YEAR

New

Fixes

Enhancements

  • [DOCS] Add JOSS reference to the citations and use the README.md as the documentation landing page. (@htwangtw)#232

Changes

0.6.0

Released May 2025

New

  • [EHN] Default atlas Schaefer20187Networks is renamed to Schaefer2018. Schaefer20187Networks will be deprecated ub 0.7.0. (@htwangtw)

  • [EHN] --work-dir is now renamed to --atlases-dir. --work-dir will be deprecated in 0.7.0. (@htwangtw)

  • [EHN] Add details of denoising strategy to the meta data of the time series extraction. (@htwangtw) #144

  • [DOCS] Add instructions to download atlases packaged in the container for contributors. (@htwangtw)

  • [DOCS] Add All Contributors bot. (@htwangtw)

Fixes

  • [FIX] Make sure version docker images matches version of package in the image (@Remi-Gau) #169

  • [MAINT] Remove recurrsive import. (@htwangtw) #135

  • [DOCS] Remove meas entity in timeseries outputs in the documentation. (@htwangtw) #136

  • [FIX] Incompatible types in assignment of variable mask_array in giga_connectome/mask.py. (@htwangtw) #189

  • [FIX] ICA-AROMA implementation. (@htwangtw) #211

Enhancements

  • [DOCS] Improve advance usage example with test data and executable code. (@htwangtw) #215

  • [DOCS] Clarify fMRIPrep versions supports. (@htwangtw) #227

Changes

  • [EHN] Merge atlas- and the atlas description desc- into one filed seg- defined under ‘Derivatives-Image data type’ in BIDS. (@htwangtw) #143

  • [EHN] Working directory is now renamed as atlases/ to reflect on the atlases directory mentioned in BEP017.

  • [EHN] Use hyphen instead of underscores for CLI arguments participant-label and smoothing-fwhm. Underscore variation will be deprecated ub 0.7.0. (@htwangtw) #190

0.5.0

Released April 2024

New

  • [EHN] Add Harvard-Oxford atlas. (@htwangtw) #117

  • [DOCS] Improved documentation on using customised configuration files. (@htwangtw)

  • [ENH] use logger instead of print statements. (@Remi-Gau)

Fixes

  • [FIX] Bump nilearn version to 0.10.2 to fix issues #26 and #27. (@Remi-Gau)

Enhancements

  • [ENH] Reduce the docker image size. (@htwangtw)

Changes

  • [ENH] Make output more BIDS compliant. (@Remi-Gau)

  • [MAINT] Pin dependencies for docker build for better reproducibility. (@Remi-Gau)

  • [MAINT] Automate docker build and release. (@Remi-Gau, @htwangtw)

  • [DOCS] Update the release and post-release procedure (@htwangtw)

0.4.0

Released August 2023

New

  • [DOCS] Documentations. What you are reading here. (@htwangtw)

  • [EHN] BIDS filter. (@htwangtw)

  • [EHN] Calculate average intranetwork correlation (NIAK feature). (@htwangtw)

  • [EHN] Add TR as an attribute to time series data. (@htwangtw)

  • [MAINT] Fully functional CI and documentations. (@htwangtw)

Fixes

Changes

  • [EHN] If an output file already exists, it will be overwritten and warning is logged. (@Remi-Gau)

  • [EHN] Default atlas is now MIST. (@htwangtw)

  • [EHN] When using the participant analysis level, the output is one file per subject, rather than one file per scan. (@htwangtw)

0.3.0

Released June 2023

New

  • [EHN] expose some preprocessing options: standardization and smoothing. (@htwangtw)

  • [EHN] --version flag. (@htwangtw)

Fixes

Changes

0.2.0

Released June 2023

New

Fixes

Changes

  • [FIX] Detact different affine matrix from input and use the most common one as group mask resampling target. (@htwangtw)

0.1.1

Released May 2023. Hot fix for 0.1.1.

New

Fixes

  • [FIX] Lock pybids and templateflow versions as new releases of pybids lead to conflicts. (@htwangtw)

Changes

0.1.0

Released May 2023

First working version of the BIDS-app. (@htwangtw)

New

  • [MAINT] Working CI for unit tests (@htwangtw).

  • [EHN] Dockerfile (@Hyedryn).

Fixes

Changes